Show Notes
Matters Microbial #130: The Holobiont — Animals, Microbes, and Ecology May 19, 2026 Today Dr. Kevin Kohl, Associate Professor of Biological Sciences at the University of Pittsburgh, joins the #QualityQuorum to discuss how he and his colleagues study the interplay between animals, their resident gut microbes, and the overarching concept of the holobiont. Host: Mark O. Martin Guest: Kevin Kohl Subscribe: Apple Podcasts, Spotify Become a patron of Matters Microbial! Links for this episode The One Health Microbiome Center at Pennsylvania State University. A very fine essay on the holobiont concept for non-microbiologists. A general introductory overview of the holobiont concept. The holobiont concept and the coral symbiosis. A partial history of the development of the holobiont concept. Dr. Casadevall suggests that context and thus outcomes describes the term "pathogen," and a similar analysis applies to the holobiont. A very short description of the holobiont concept. Another overview of the holobiont concept in general, coauthored by Dr. Kohl. Some basic rules for thinking about the holobiont concept. A video introduction to the holobiont concept, by Dr. Seth Bordenstein. I highly recommend this essay by the science writer Carl Zimmer, "The Human Lake," to think of the connections between lake ecology and microbial interactions with humans. Another wonderful article recommended by Dr. Kohl, by Dr. Margaret McFall-Ngai and coauthors, detailing the impact microbes have on animals over evolution and development. The wood rat – creosote – microbiome connection to the holobiont concept, discussed on this podcast (coauthored by Dr. Kohl). The fascinating work by Dr. Kohl and colleagues showing the relationship between tadpole development and pond microbes discussed in this podcast. A must read article by Dr. Kohl and colleagues, "Through the microbial looking glass: our shifting understanding of the holobiont and microbes as mediators of organismal biology," illustrates the development and influence of the holobiont concept. Dr. Richard Prum's book, "Performance All the Way Down," was discussed during this podcast. There is also a video where Dr. Prum discusses the ideas in this book, describing gene regulation as a performance. Dr. Kohl's faculty website. Dr. Kohl's (very interesting) research website. Intro music is by Reber Clark Send your questions and comments to [email protected]
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Matters Microbial #141: How Tardigrades Survive What We Do To Them October 20, 2026 Today Dr. Molly Jane Kirk, postdoctoral scholar in the Department of Molecular, Cellular, and Developmental Biology at UC Santa Barbara, joins the quality quorum to discuss her research fascination with the biology and resilience of a microscopic multicellular eukaryote, the famous tardigrade.
Matters Microbial #140: Out of Many, One — Coral and Jellyfish Holobionts October 7, 2026 Today Dr. Monica Medina, Professor in the Department of Ecology and Evolutionary Biology at UCLA, joins the quality quorum to discuss how organisms are made up of myriad other organisms—the holonbiont concept. Dr. Medina and her research group focus on studying this in jellyfish and coral.
Matters Microbial #139: How Listeria Gets By With a Little Help From Its Friends September 23, 2026 Today Dr. Jasna Kovac, Huck Chair in Microbiomes in Food Safety and Associate Professor of Food Science at Penn State University (and active member of Penn State's One Health Microbiome Center) joins the quality quorum to discuss how understanding the microbiome in food processing facilities can help reduce the incidence of food borne illnesses, including Listeria. Host: Mark O. Martin Guest: Jasna Kovac Subscribe: Apple Podcasts, Spotify Become a patron of Matters Microbial! Links for this episode Here is an overview of Listeria as a microbe. Here is an overview of Listeria pathogenesis. A video showing "actin rockets" moving Listeria around inside of a eukaryotic cell. Overview from the CDC regarding Listeria. Prior #MattersMicrobial podcast about Listeria by Dr. Lisa Gorski. An overview of microbial food safety issues. Description of the cantaloupe associated Listeria outbreak. Description of the caramel apple Listeria outbreak. An overview of whole genome sequencing as a diagnostic tool. A video description of MIC (minimal inhibitory concentration) relationship between microbes and antimicrobials. An overview of biofilms. A prior #MattersMicrobial podcast about biofilms with Dr. Matthew Fields. The One Health Concept linking many aspects of everyday life to microbiology. A description of Sanger 16S rRNA sequencing. An overview of MPN (most probably number) analysis in microbiology. A video describing the very useful LIVE/DEAD dye approach in microbiology. Microbiology and sanitizers. An overview of EPS (extracellular polysaccharides). Description of SNPs (single nucleotide polymorphisms). An overview of the lineages of Listeria. A description of Dr. Kovac's approach to precision food safety. A nice description of Dr. Kovac's evaluation of tree fruit processing plants described in this podcast. A wonderful video presentation by Dr. Kovac. Dr. Kovac's academic website. The research laboratory website for Dr. Kovac and colleagues. Intro music is by Reber Clark Send your questions and comments to [email protected]
Matters Microbial #138: Sightseeing the Microbial World September 8, 2026 Today Dr. Monika Oli, Instructional Professor of the Department of Microbiology and Cell Science at the University of Florida joins the quality quorum to discuss how she teaches microbiology students to view the topic through a global lens as a study abroad program. Her approach demonstrates how travel enriches scientific understanding, broadens cultural perspectives, and prepares students to become globally engaged microbiologists equipped to address the challenges of an interconnected world.
Matters Microbial #137: The Living Skin of Our Planet August 25, 2026 Today Dr. Estelle Couradeau, Assistant Professor in the Department of Ecosystem Science and Management and the Huck Institutes of the Life Sciences at the Pennsylvania State University, joins the quality quorum today to discuss the role that the soil microbiome can play in terms of agriculture, moderating temperature, and protecting specific environments.