On reproducibility of modeling and 10 years with the Potjans-Diesmann network model - with Hans Ekkehard Plesser - #37
Theoretical Neuroscience PodcastShow Notes
Reproducibility is key for scientific progress. If research results cannot be reproduced and trusted, other researchers cannot build on them. Reproducibility is a challenge also in computational neuroscience, and today's guest has worked on how this can be remedied, for example, through standardized model description and model sharing. He also recently organised a workshop celebrating a decade with the (reproducible) Potjans-Diesmann neural network model, which has become an important community tool.
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For neurons to function, the appropriate ion-channel proteins must be present where they are needed, including in distal dendrites and axon terminals. This requires energy, and the guest's group has developed a mechanistic mathematical model to investigate how neurons can reduce this cost by optimizing where proteins are synthesized within the cell—locally or at more distant sites. The model's predictions agree with experimental findings, suggesting that energy optimization is a fundamental operating principle of neurons.
The prominent and colorful neuroscientist Valentino Braitenberg was born 100 years ago. He co-founded the Max Planck Institute of Biological Cybernetics in Tübingen in Germany, where he made seminal contributions to neuroanatomy, synthetic psychology, and theories for cerebellar, fly vision and cortical function. He was celebrated at the recent Braitenberg*100 symposium which I attended together with today's guest. Ad Aertsen is an outstanding computational neuroscientist and worked with Braitenberg back in the days.
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Most neural network models till date have assumed all neurons to be identical, or at least that all neurons within a population are identical. In reality, no two neurons are completely the same. Is this due to unavoidable "biological noise" that the nervous system has to cope with, or can it be a useful feature included by design? The guest co-wrote the recent paper "How heterogeneity shapes dynamics and computation in the brain" addressing this question.